miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|76835542|gb|DV127278.1|DV127278 GAACCTTTTATGAAGAGTGTTTCTCCATCTCCATCTTCTTCCTCTTTAAATATTCCATTTTCTTCTTCTTCTTCTTTACC
TCCTCTACCTTCTACATCTTATGATTACCTTTCTTTTTCTTCTAATTCTGAATCTTTTTCAGAATTTCAGGACCCGAATT
TGAATACCCACCTATTTTCAAATGGTTATTCAATCGGTTTCCCACCACAACCCAGTTCAATCGGGTTAAACCACCTCACC
CCAACCCAGATCCACCAGATCCAAACCCAAATCCACCACCAAAACACCTTCTCCTATCAAAACTCCCAAAATTACTCAAT
TCAACCCCACCCAAGTCTCAATTTCTTGTCACCCAAACCGGTTCAAATGAAACAAGTCGGATCGGGTTCTCTAACAAAGC
CCACGAAACTTTACAGAGGAGTAAGGCAACGACATTGGGGGAAATGGGTCGCTGAGATCCGGCTCCCAAAGAACCGAACC
CGGCTCTGGCTTGGAACTTTTGACACAGCTGAGGAAGCTGCTTTGGCTTATGATAAGGCGGCTTATAAGCTCCGGGGAGA
CTTCGCCAGACTAAATTTTCCGAACCTCCGGCACCAGGATTCCACAATTGAAGGCAAATTCGGGGAGTACAAGCCTCTCC
ATTCCTCCGTTGATGCGAAATTGCAAGCTATTTGTCTAAGCTTAGCTGAATCGC




Most similar to sp|Q8H1E4|RAP24_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor
           RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1
          Length = 334

 Score =  169 bits (428), Expect = 2e-41
 Identities = 86/127 (67%), Positives = 92/127 (72%), Gaps = 9/127 (7%)
 Frame = +1

Query: 340 NFLSPKPVQMKQ---------VGSGSLTKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWL 492
           N LSPKP+ MKQ          GSG  +KPTKLYRGVRQRHWGKWVAEIRLP+NRTRLWL
Sbjct: 119 NLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWL 178

Query: 493 GTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLRHQDSTIEGKFGEYKPLHSSVDAKLQAI 672
           GTFDT               RGDFARLNFPNLRH  S I G FGEYKPLHSSVDAKL+AI
Sbjct: 179 GTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAI 238

Query: 673 CLSLAES 693
           C S+AE+
Sbjct: 239 CKSMAET 245